A view of a document library has a setting under Folders area if the files should be shown in their respective folder or just a flat list of file. If "Show all items withtout folders" is selected, following is my observation:
- Saving the document library as a template and creating new libraries from this template takes this setting into the new library as expected
- Saving the site as a template and creating a new site from template removes this setting from the existing document libraries in newly created sites. If a new document library is created from the document library template, the setting is ON as expected.
This seems to be related to what being discussed here
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